PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001010.1_g000088.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 653aa    MW: 73771.9 Da    PI: 5.7654
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001010.1_g000088.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.46.1e-1142786481373
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l+ lL++cAeavs +d e a++lL+++ +++sp gd +qRla++f++AL+arla++++++y al++++ s    +++l++++++
  Rmu_sc0001010.1_g000088.1 278 LRALLMSCAEAVSVDDCETASELLKQIMQHSSPFGDYTQRLAHCFANALEARLAGTGTQIYTALSTKRMS---AADTLKFYQAY 358
                                5789************************************************************999998...9********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                  v+P++k+  + aN++Il+a+e++e++HiiDf+i +G+QWpaL++ L+ Rp+gpp+lRiTgv+ p sg   +e+++etg+rL+
  Rmu_sc0001010.1_g000088.1 359 IAVCPFMKMLMVFANHMILKAAEKAETLHIIDFGILYGFQWPALIHCLSRRPGGPPKLRITGVELPLSGfrPEERVQETGHRLS 442
                                ******************************************************************9999************** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                k++++++vpfe+ + +ak++e+l++++L+v+++E+laVn+  + ++llde+v ++s+rd vL+++++l+P+v+v +  + +h+ 
  Rmu_sc0001010.1_g000088.1 443 KYCKRFNVPFEYCA-IAKKWETLQFDDLKVQRNEVLAVNCLCRFKYLLDETVVVNSPRDIVLNFIRKLNPDVFVQSVVNGSHQF 525
                                **************.7******************************************************************** PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                + F+ rf eal ++salfd+l++++p++++ r   E+e++gre+ n+vaceg++r+ r et+++W+ r ++aGF+++pl+++++
  Rmu_sc0001010.1_g000088.1 526 PFFVPRFREALFHFSALFDMLDNNFPPDDQMRLGFEKEFIGREVLNIVACEGSQRIVRPETYKQWQIRNMRAGFRQLPLDHEVM 609
                                ************************************************************************************ PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                +++k  +++ +   + v+e+ +++++gWk+r +++  +W
  Rmu_sc0001010.1_g000088.1 610 NKIKDNVKMGYHPYFVVDEDGHWMLQGWKGRIMFASACW 648
                                ***********999************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    
MDPRFSEFPN FNDQTLLPDM LNEYPSSHPF EDLSFLDPNP SNYALSSSFA PEGDDGEFSG  60
SVLKYINQVL MEEDMDPLAL QATEESLYEA IGGKYPTSHD QNPICTDQNV HGNGNGMVGC  120
ELMVPDVICK NELLVQFNRG AEEGSKFLPR GQLVSAEGNK PYAVADRKAG DAVVMTQKNG  180
SEHFCVSSRG KKNHRREEID LEDGRCNKQS AVYMDDEEGE LSDIFDKVLL SKPIKSKDDQ  240
VSQNGANNGL QQDGQSVGIG NGKVCGKNQG NKKEVIDLRA LLMSCAEAVS VDDCETASEL  300
LKQIMQHSSP FGDYTQRLAH CFANALEARL AGTGTQIYTA LSTKRMSAAD TLKFYQAYIA  360
VCPFMKMLMV FANHMILKAA EKAETLHIID FGILYGFQWP ALIHCLSRRP GGPPKLRITG  420
VELPLSGFRP EERVQETGHR LSKYCKRFNV PFEYCAIAKK WETLQFDDLK VQRNEVLAVN  480
CLCRFKYLLD ETVVVNSPRD IVLNFIRKLN PDVFVQSVVN GSHQFPFFVP RFREALFHFS  540
ALFDMLDNNF PPDDQMRLGF EKEFIGREVL NIVACEGSQR IVRPETYKQW QIRNMRAGFR  600
QLPLDHEVMN KIKDNVKMGY HPYFVVDEDG HWMLQGWKGR IMFASACWAP SRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein