PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001018.1_g000013.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 171aa MW: 18991.6 Da PI: 5.5396

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001018.1_g000013.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.9	1e-44	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +Ca+Ck+lrr+Ca+dC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r+da+sslvyeA+ar+rdPvyG+vg i+ lq Rmu_sc0001018.1_g000013.1 8 PCASCKLLRRRCAQDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRTDAVSSLVYEANARVRDPVYGCVGAISCLQ 91 7********************************************************************************* PP DUF260 85 qqleqlkaelallkee 100 +q+++l+ +la++++e Rmu_sc0001018.1_g000013.1 92 NQVSELQMQLAVAQAE 107 *********99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
MGGNGTSPCA SCKLLRRRCA QDCIFAPYFP SDDPHKFAIV HKVFGASNVS KMLQELPVHQ 60 RTDAVSSLVY EANARVRDPV YGCVGAISCL QNQVSELQMQ LAVAQAEILC IQMQQEPMVL 120 PSQQMDTCTD DERTYFLNNN LPQYLDFPSS SSSNIHDSLK REGIFGHDMV S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-78	LBD family protein