PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001034.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 638aa MW: 72302.6 Da PI: 4.9073

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001034.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.6	7.7e-43	9	135	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyat.gkrknratksgyW 83 +GfrFhPt+eelv++yL++k++g++++ +i+e+di+++eP+dLp ++ ++++ew++Fs+ d k ++ +r+nrat++g+W Rmu_sc0001034.1_g000001.1 9 RVGFRFHPTEEELVNYYLNNKIQGHDFND--IIPEIDICSYEPSDLPgFSLIKSDQEWFYFSQPDYKFRNnRSRANRATERGFW 90 68********************99665..8***********766667899***9998875388******* PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 k tgk++e++++ ++++vg k+tL+fykg+ ++g+kt+Wv+hey Rmu_sc0001034.1_g000001.1 91 KITGKEREIKAReSKAVVGKKRTLTFYKGKVRRGQKTNWVIHEYY 135 ******99566779************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence
MATAAVELRV GFRFHPTEEE LVNYYLNNKI QGHDFNDIIP EIDICSYEPS DLPGFSLIKS 60 DQEWFYFSQP DYKFRNNRSR ANRATERGFW KITGKEREIK ARESKAVVGK KRTLTFYKGK 120 VRRGQKTNWV IHEYYIPETL LPNAAKQRDF VLCRLKKKDE STEIGACDEG EPRTNDQSDF 180 ENLLALVHTA GVPEENIRPE EILGSLFSSR ASPELPQSDD YFSSMLRGNF QHANAGSTIH 240 IETEDDTEFL KSIFVDQDDY SFEEETHATL NHSSVDKRTL EAAQDITLPV ASSLSERDKD 300 VLLLNQIFGK DDASVNVAVN KHRDIDRVQS VTDEIEHEPS PILLQEPQAS FSRDEHSINC 360 LTLVTDDESS INKSRRRRRQ RSKTTVLASL QGKTETAQSF DYGEVLQAHE KRYVEDQDIE 420 GAGQAFSLPV ASSLSGKGAL LVNTAASGSR SMGSRILPTS FQSVSEETKY QPCPSFSEVL 480 QGSNMPSRTL ATDESSLYES SHFGFIPEST TLHATGSMFG TYILQCGDEE THSGSKIISP 540 DVFDCVDNNG WQTFEIIFCR AELATTKFAD LFNVSSRRSR QNNTRPVIIT RICLEDNFII 600 LFWLLERREV LAEIFYLLHD LFIIFCEVPF SFGTCLGR

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence

MATAAVELRV GFRFHPTEEE LVNYYLNNKI QGHDFNDIIP EIDICSYEPS DLPGFSLIKS  60
DQEWFYFSQP DYKFRNNRSR ANRATERGFW KITGKEREIK ARESKAVVGK KRTLTFYKGK  120
VRRGQKTNWV IHEYYIPETL LPNAAKQRDF VLCRLKKKDE STEIGACDEG EPRTNDQSDF  180
ENLLALVHTA GVPEENIRPE EILGSLFSSR ASPELPQSDD YFSSMLRGNF QHANAGSTIH  240
IETEDDTEFL KSIFVDQDDY SFEEETHATL NHSSVDKRTL EAAQDITLPV ASSLSERDKD  300
VLLLNQIFGK DDASVNVAVN KHRDIDRVQS VTDEIEHEPS PILLQEPQAS FSRDEHSINC  360
LTLVTDDESS INKSRRRRRQ RSKTTVLASL QGKTETAQSF DYGEVLQAHE KRYVEDQDIE  420
GAGQAFSLPV ASSLSGKGAL LVNTAASGSR SMGSRILPTS FQSVSEETKY QPCPSFSEVL  480
QGSNMPSRTL ATDESSLYES SHFGFIPEST TLHATGSMFG TYILQCGDEE THSGSKIISP  540
DVFDCVDNNG WQTFEIIFCR AELATTKFAD LFNVSSRRSR QNNTRPVIIT RICLEDNFII  600
LFWLLERREV LAEIFYLLHD LFIIFCEVPF SFGTCLGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.2	1e-44	NAC family protein