PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001034.1_g000015.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 417aa MW: 46437.1 Da PI: 4.8466

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001034.1_g000015.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.5	6.8e-29	3	125	23	128
NAM 23 vegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +g++ e++ +i+e++++++eP+dLp+ ++ + +++wyf+s+rd ky +++r+nr+t++gyWk tgkd++ Rmu_sc0001034.1_g000015.1 3 NQGRDSEITAMIPEMNLCRHEPHDLPAlvlargelldrewytALMSWDRQWYFYSRRDFKYIKSTRSNRTTREGYWKITGKDRA 86 56667778778*************66899999999988775555789******************************* PP NAM 92 vlsk.kgelvglkktLvfy.kgrapkgektdWvmheyrl 128 +++ +++++g k+tL+fy k pk++kt+Wv+hey l Rmu_sc0001034.1_g000015.1 87 IKAPgSKAVIGRKRTLTFYiKSGVPKPQKTNWVLHEYYL 125 9666779******666899**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MKNQGRDSEI TAMIPEMNLC RHEPHDLPAL VLARGELLDR EWYTALMSWD RQWYFYSRRD 60 FKYIKSTRSN RTTREGYWKI TGKDRAIKAP GSKAVIGRKR TLTFYIKSGV PKPQKTNWVL 120 HEYYLTKANS DEQIGDFVLC RLKRKADESD HDKQVCDGGE TGTGMASNVE NQAAAEGMIA 180 EAGENLAFKE QGDAVWESDG NEHQLKGLQT APCGKDRNDL PISVEGQTNS CNSSDSDMNE 240 ELRDEPENLD YSPFDQPPPP QPQSPKKLGN VSHTTNAHID ECRKRKDQFG DNNPSPTKQN 300 HISTNDVNEL ASNTEPNSKN QAADAIPEGC SQPGENLGSD PFQSLEPLSI NRELRDFSHY 360 NNSIGWDGMP IEGIDSSLAK FLDTFIDGGS SDGHNKVAYG LVNDCSALAI GETLQCS

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MKNQGRDSEI TAMIPEMNLC RHEPHDLPAL VLARGELLDR EWYTALMSWD RQWYFYSRRD  60
FKYIKSTRSN RTTREGYWKI TGKDRAIKAP GSKAVIGRKR TLTFYIKSGV PKPQKTNWVL  120
HEYYLTKANS DEQIGDFVLC RLKRKADESD HDKQVCDGGE TGTGMASNVE NQAAAEGMIA  180
EAGENLAFKE QGDAVWESDG NEHQLKGLQT APCGKDRNDL PISVEGQTNS CNSSDSDMNE  240
ELRDEPENLD YSPFDQPPPP QPQSPKKLGN VSHTTNAHID ECRKRKDQFG DNNPSPTKQN  300
HISTNDVNEL ASNTEPNSKN QAADAIPEGC SQPGENLGSD PFQSLEPLSI NRELRDFSHY  360
NNSIGWDGMP IEGIDSSLAK FLDTFIDGGS SDGHNKVAYG LVNDCSALAI GETLQCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	2e-27	NAC family protein