PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001048.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 232aa    MW: 26119.5 Da    PI: 8.3309
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001048.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.23.7e-222067249
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               +i   +n qvtfskRr g++KKA+EL++LC++eva+++fs+ +k y +
  Rmu_sc0001048.1_g000001.1 20 KIAKRTNLQVTFSKRRSGLFKKASELCTLCGVEVAIVVFSPANKPYSF 67
                               577899*************************************98877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MMMKKTNKSS QGRQKIPIAK IAKRTNLQVT FSKRRSGLFK KASELCTLCG VEVAIVVFSP  60
ANKPYSFGHP DVDSLIDRFL ARNPNFNISL ADSCQQLGEA HKNASANELN MHLTRISNEI  120
ETERKRGESL DKLSKTSECW WENPVDELGQ DELQTLKAAM EELKKNVNEQ ANRIWMESSN  180
TTSIANNSSS FFMMNNAHHI FENSRSSDQV GSDSIYIPRA YDFGFAGNIG LF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-57M-type_MADS family protein