PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001096.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GRF

Protein Properties

Length: 431aa MW: 47359.6 Da PI: 8.7984

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001096.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.2	1.6e-24	152	195	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep rCrRtDGKkWRCsr+v+ g+k+CErH+hrgr+rsrk++e Rmu_sc0001096.1_g000014.1 152 DPEPTRCRRTDGKKWRCSRDVVTGQKYCERHVHRGRNRSRKHVE 195 79****************************************98 PP
2	QLQ	53.1	9.8e-19	85	121	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ +Q+q+L+ Q+l+++y++a++ vPpeLlq+i++ Rmu_sc0001096.1_g000014.1 85 SYFSMSQWQELELQALIFRYMLAGAAVPPELLQPIKR 121 79*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MDFHLKQWRN QQHESEEQQP YSSATKIPKL EHLQTQTHPE PASGYALPLF VPEPNTKVIS 60 NLSAFSESTT PTPASSATRF PRMGSYFSMS QWQELELQAL IFRYMLAGAA VPPELLQPIK 120 RSLLHSQFFF HHSLQQYPAL LQSGYWGRGA MDPEPTRCRR TDGKKWRCSR DVVTGQKYCE 180 RHVHRGRNRS RKHVEVTTAT TTTTAAGGGV RTLDAATTKA VVTVASSLGN GSDGTHFALS 240 GSSPSIDLLQ LKQSSLESKH ENKSFFDNRR EVSGGIQSDN HILRPFFDDW PGQLQEPHNG 300 RGNASSMNSA TSLSISIRGN TSSSDVSLKL STGNGVEPGQ ESEQPQLNWP TGWGTNHMAS 360 MGGPLAEALR SSNSNSNSNS NSSPTSVLHR LPRGSVNETS FISCRGSAFL QLQLQLLTDQ 420 CSSSVASWLC Q

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MDFHLKQWRN QQHESEEQQP YSSATKIPKL EHLQTQTHPE PASGYALPLF VPEPNTKVIS  60
NLSAFSESTT PTPASSATRF PRMGSYFSMS QWQELELQAL IFRYMLAGAA VPPELLQPIK  120
RSLLHSQFFF HHSLQQYPAL LQSGYWGRGA MDPEPTRCRR TDGKKWRCSR DVVTGQKYCE  180
RHVHRGRNRS RKHVEVTTAT TTTTAAGGGV RTLDAATTKA VVTVASSLGN GSDGTHFALS  240
GSSPSIDLLQ LKQSSLESKH ENKSFFDNRR EVSGGIQSDN HILRPFFDDW PGQLQEPHNG  300
RGNASSMNSA TSLSISIRGN TSSSDVSLKL STGNGVEPGQ ESEQPQLNWP TGWGTNHMAS  360
MGGPLAEALR SSNSNSNSNS NSSPTSVLHR LPRGSVNETS FISCRGSAFL QLQLQLLTDQ  420
CSSSVASWLC Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	2e-83	GRF family protein