PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001097.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 208aa    MW: 23466.8 Da    PI: 10.125
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001097.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.4e-30959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  Rmu_sc0001097.1_g000003.1  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYAT 59
                               79***********************************************86 PP
2K-box805.7e-276012634100
                      K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                                  R++ GedL++Lsl+eLq+Leqq++++lk++R++Kn++++e+i+e+qkk + lqe+n++L kkl+e
  Rmu_sc0001097.1_g000003.1  60 DSRNYTGEDLDPLSLRELQSLEQQIDTALKRVRARKNQVMHESISEMQKKHRTLQEQNNSLAKKLKE 126
                                57**************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MGRGKVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEYATD  60
SRNYTGEDLD PLSLRELQSL EQQIDTALKR VRARKNQVMH ESISEMQKKH RTLQEQNNSL  120
AKKLKENEKL LQEEPNNNQQ PNPSTLVLMP PLQATSPPAL LSSLTIGGAF QGRGDAMDED  180
AEDHQGSAQT RPASNTLMPP WMVRHLNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.14e-53MIKC_MADS family protein