PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001118.1_g000014.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 619aa    MW: 68437.1 Da    PI: 5.4219
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001118.1_g000014.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4455.2e-1362516101374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                lv+ L++cAeav+ +++ la+al++++s la +++ +m+++a++f+eALa+r+ +    +y    p++  +++ se l++   f
  Rmu_sc0001118.1_g000014.1 251 LVHGLMACAEAVQRKNFDLAKALVTQISYLAISQAGAMRKVATFFAEALAQRIWG----VY----PQPPIDHTYSEMLQM--HF 324
                                6899***************************************************....44....444443334555444..6* PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                                +e++P+lkf+h+taNqaIle ++ ++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++
  Rmu_sc0001118.1_g000014.1 325 YETCPYLKFAHFTANQAILEGFQDKKRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNSDHLQEVGWKLAQL 408
                                ************************************************************************************ PP

                       GRAS 169 AeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                Ae+++v+fe++ +va++l+dl+ ++L+++p   E++aVn+v++lh+ll++++++++    vL++vk+++P++v+vveqea+hn+
  Rmu_sc0001118.1_g000014.1 409 AETIHVEFEYRGFVANSLADLDASMLELRPseVESVAVNSVFELHKLLARPGAIDK----VLSVVKQMKPEIVTVVEQEANHNG 488
                                ******************************88899*************99999988....************************ PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                + Fl+rf e+l+yys+lfdsle ++   +++++++++++lg++i nvvaceg +r+erhetl++Wr r++++GF pv+l+++a 
  Rmu_sc0001118.1_g000014.1 489 PVFLDRFNESLHYYSTLFDSLEGSV---NSQDKMMSEVYLGKQIFNVVACEGPDRVERHETLSQWRTRFDASGFAPVHLGSNAF 569
                                ************************7...899999999*********************************************** PP

                       GRAS 335 kqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  Rmu_sc0001118.1_g000014.1 570 KQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWK 610
                                ****************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    
MKREHHSHPH HHHPNPNPSM ASTSNDKAGK AAMWEDSQRD DGMDELLAVL GYKVKSSNMA  60
DVAQKLEQLE EFMGTVQEDG LSQLASDTVH YNPSDLSTWL ESMISEITPP PNFDPVMAAP  120
PPLNHLAGSS VVLDDSSFLA PAESSTITSI DFGDQQHMNT NSKSLSPRTQ FEDCSSSNYE  180
LKAIPGKAIF SQTQFDSSPR EPKRLKPCSS SDFYSTTTTT NSSLQPVVSL PNNESTRPVV  240
VVDSQENGVR LVHGLMACAE AVQRKNFDLA KALVTQISYL AISQAGAMRK VATFFAEALA  300
QRIWGVYPQP PIDHTYSEML QMHFYETCPY LKFAHFTANQ AILEGFQDKK RVHVIDFSMN  360
QGMQWPALMQ ALALRPGGPP AFRLTGIGPP AADNSDHLQE VGWKLAQLAE TIHVEFEYRG  420
FVANSLADLD ASMLELRPSE VESVAVNSVF ELHKLLARPG AIDKVLSVVK QMKPEIVTVV  480
EQEANHNGPV FLDRFNESLH YYSTLFDSLE GSVNSQDKMM SEVYLGKQIF NVVACEGPDR  540
VERHETLSQW RTRFDASGFA PVHLGSNAFK QASMLLALFA GGDGYRVEEN DGCLMLGWHT  600
RPLIATSAWK LGCSQSVTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein