PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001122.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 194aa    MW: 21088.6 Da    PI: 5.1453
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001122.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-1998148155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GVr+++  g+W+AeIrdp+    r  r++lg+f t+eeAa+a++  +++++g
  Rmu_sc0001122.1_g000006.1  98 SKYRGVRQRP-GGKWAAEIRDPR----RaVRVWLGTFQTEEEAARAYDTKALQFRG 148
                                89********.9*********82....48***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MKSSGSKMPK EQEHAIIVST LKRVIRGGVG TDNAPSQPPP PSTQLPATGD TDQVVIPFSD  60
CDDTCQVCKM GKDDCLGCGL FPPSEQELQD KGKKVKTSKY RGVRQRPGGK WAAEIRDPRR  120
AVRVWLGTFQ TEEEAARAYD TKALQFRGAD RAKLNFPPSW DTGTTSGAMA DETKVQTSPV  180
GESSAAEDEE EMDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-26ERF family protein