PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001144.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MIKC_MADS

Protein Properties

Length: 185aa MW: 20612.4 Da PI: 9.0198

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001144.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102.5	1.5e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ss Rmu_sc0001144.1_g000005.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFSS 59 79***********************************************96 PP
2	K-box	46.1	2.1e-16	62	117	37	92
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 hllGedL++Ls+keLq+Le+qLe +l++ R++K++ l + +l+ k ++ e+ k Rmu_sc0001144.1_g000005.1 62 HLLGEDLGPLSVKELQNLEKQLEGALTQARQRKERQLGDLNLQLRDKLQKEGENLK 117 9************************************9999999998887766655 PP

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFSSA 60 GHLLGEDLGP LSVKELQNLE KQLEGALTQA RQRKERQLGD LNLQLRDKLQ KEGENLKAIQ 120 DFWSSNSAAA GNSNFLHSSQ ASHIDPAPEP ILQIGYHHYV AAESADVPKS MALAAETNFI 180 QGWVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-67	MIKC_MADS family protein