PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001167.1_g000007.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 156aa    MW: 17916.2 Da    PI: 7.451
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001167.1_g000007.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.43.6e-2150135290
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                                 Y+eY+ ++GFsvr+ + +k+  n+ +++ +++Cskeg++ +++ + e ++  r   rtgC+ k++  +++++ w+ t ++ eH
  Rmu_sc0001167.1_g000007.1  50 LYCEYGARMGFSVRIMQRRKT--NNVVKQVNYCCSKEGFKLDSDPS-EVKKADRLDIRTGCTTKIRFGLQDNNLWKATLFVPEH 130
                                7***************98888..889****************9999.99999******************************** PP

                       FAR1  86 nHela 90 
                                nH+la
  Rmu_sc0001167.1_g000007.1 131 NHKLA 135
                                ***97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    
MPTLIDIEDD GEHSMGTALG KDSMFVNRQT SNDDDLYGVI VNSEEEAYNL YCEYGARMGF  60
SVRIMQRRKT NNVVKQVNYC CSKEGFKLDS DPSEVKKADR LDIRTGCTTK IRFGLQDNNL  120
WKATLFVPEH NHKLAKLEER QFFSNRKVSN AHQGVR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.23e-14FAR1 family protein