PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001226.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 346aa MW: 38282.6 Da PI: 8.4562

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001226.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.3	1.9e-36	46	137	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 Fl+k+y++++d++++ ++sws+++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ Rmu_sc0001226.1_g000001.1 46 FLSKTYDMVDDPATDPIVSWSATNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEG 120 9******************999*************************************999.........*** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkks 102 F +g+k+ll++i+r+k Rmu_sc0001226.1_g000001.1 121 FLRGQKHLLKSINRRKP 137 ************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MAGANSNADE APAGGGAQPA QAAAGGGLES APAPTPLLNS NAPPPFLSKT YDMVDDPATD 60 PIVSWSATNN SFVVWNPPEF ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG 120 FLRGQKHLLK SINRRKPAHG HVHQQPQQPS HGQSSVAACV EVGKFGLEEE IERLKRDKNV 180 LMQELIRLRQ QQQSTDNQLQ TMVQRLQGME QRQQQMMSFL AKAVQSPGFL NQFVQQQNDS 240 NRRLTEVNKK RRLREEGIAE NERSDTPDGQ IVKYQPPMNE AAKAMVRQMM KTNTSSQLDS 300 FSNNLENFLI GEGSSSSSAV DSGSSSSHVS GATLQEVPPT SGRGPY

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MAGANSNADE APAGGGAQPA QAAAGGGLES APAPTPLLNS NAPPPFLSKT YDMVDDPATD  60
PIVSWSATNN SFVVWNPPEF ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG  120
FLRGQKHLLK SINRRKPAHG HVHQQPQQPS HGQSSVAACV EVGKFGLEEE IERLKRDKNV  180
LMQELIRLRQ QQQSTDNQLQ TMVQRLQGME QRQQQMMSFL AKAVQSPGFL NQFVQQQNDS  240
NRRLTEVNKK RRLREEGIAE NERSDTPDGQ IVKYQPPMNE AAKAMVRQMM KTNTSSQLDS  300
FSNNLENFLI GEGSSSSSAV DSGSSSSHVS GATLQEVPPT SGRGPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-121	HSF family protein