PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001250.1_g000014.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YC
Protein Properties Length: 123aa    MW: 13396.4 Da    PI: 8.24
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001250.1_g000014.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC109.61.8e-34231031998
                      NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                                h+lPlarikki+k + edvkmis eaP+++skacelfi elt rsw  + + krrtl+k d+a+av  tdifdflv +v +
  Rmu_sc0001250.1_g000014.1  23 HSLPLARIKKIMKkSSEDVKMISGEAPIVFSKACELFIEELTRRSWATTLQGKRRTLHKDDVASAVVATDIFDFLVSMVSE 103
                                99**********73579***********************************************************99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    
MRQAGKYSGF MMCGGIAGRT GPHSLPLARI KKIMKKSSED VKMISGEAPI VFSKACELFI  60
EELTRRSWAT TLQGKRRTLH KDDVASAVVA TDIFDFLVSM VSETASHSED GTVPKEEETV  120
GSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.32e-35NF-YC family protein