PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001301.1_g000047.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 458aa MW: 51922.3 Da PI: 6.9583

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001301.1_g000047.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.7	1.2e-49	28	153	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWka Rmu_sc0001301.1_g000047.1 28 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKA 110 79*************************.89***********888889*************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg d+ + s++ + +glkktLvfy+g+apkg +t+W+m+eyrl Rmu_sc0001301.1_g000047.1 111 TGADRMIRSENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 153 ***************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MSHEEDESNK QGNHHDEVDD EHEHDMVMPG FRFHPTEEEL IEFYLRRKVE GKRFNVELIT 60 FLDLYRYDPW ELPAMAAIGE KEWFFYVPRD RKYRNGDRPN RVTTSGYWKA TGADRMIRSE 120 NFRSIGLKKT LVFYSGKAPK GIRTSWIMNE YRLPHHETER YQKGEISLCR VYKRPGVEDH 180 PSLPRSLPSS RAAANANNAS TSRSVLAQSS SSSTLDKKQH SINSSLMEKL QANFNFNGGS 240 PSLGQSVEQL HHHQDQVAAD PKINETEGSS GNSDVTSTLG VGLRSSAPNI PPIHLPSSSL 300 GLQPHHHHHG GVLHLDDQAE QEGMSTFLQQ QQHHHSKPQS MLFAGSSVSS TSNPIDDLQR 360 LLNYQQQQAV SSIANQQQAL HVQQYYDAHN HNHHHHQVPS NVVNHFSSPF PLVPPPSSQS 420 QLSPNGLPIT AFSDRLWDWN PISEPNRAPD QYNTNPFK

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MSHEEDESNK QGNHHDEVDD EHEHDMVMPG FRFHPTEEEL IEFYLRRKVE GKRFNVELIT  60
FLDLYRYDPW ELPAMAAIGE KEWFFYVPRD RKYRNGDRPN RVTTSGYWKA TGADRMIRSE  120
NFRSIGLKKT LVFYSGKAPK GIRTSWIMNE YRLPHHETER YQKGEISLCR VYKRPGVEDH  180
PSLPRSLPSS RAAANANNAS TSRSVLAQSS SSSTLDKKQH SINSSLMEKL QANFNFNGGS  240
PSLGQSVEQL HHHQDQVAAD PKINETEGSS GNSDVTSTLG VGLRSSAPNI PPIHLPSSSL  300
GLQPHHHHHG GVLHLDDQAE QEGMSTFLQQ QQHHHSKPQS MLFAGSSVSS TSNPIDDLQR  360
LLNYQQQQAV SSIANQQQAL HVQQYYDAHN HNHHHHQVPS NVVNHFSSPF PLVPPPSSQS  420
QLSPNGLPIT AFSDRLWDWN PISEPNRAPD QYNTNPFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-107	NAC family protein