PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001308.1_g000039.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 836aa MW: 93992.8 Da PI: 5.719

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001308.1_g000039.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	426	444	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C+ Cg+ F++ ++++rH++ Rmu_sc0001308.1_g000039.1 426 CKSCGRYFPDIELFNRHLS 444 *****************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence
MEAEADWVST KSLYICSMER YKDESVLTQC YSVQAINLTD LLSFSDTPIT ISFSRSPPTK 60 AMGSPPTKVQ DHILREVDFL QGNDVPYEMG FGVFGSQIVL AGGLQLPQIH PTSKVYVLDT 120 LRDKPKFIKR KANKPKAKAR DHGFPEFQSP KYLPQLMEIE GKLYAVELKP EEDFPSSSSF 180 EVFDPQTGSW AALPDHPPPI IECGGLLSCA VVGTKFLISA GDTPTYCFDV AEPTRPWNEL 240 RLRNDGPKLY DYNDPNSLPF LQVLVLDLEE DNHKILFSSS GNDILVFHMN LSNDLALELI 300 ATIRVDIKFD ESSVSFTHLG GQKVCFVFLD WWIFDKMRGV FFTFEYSFSK SAASPDTQTS 360 SCGDDPYFRV FYPSNSNGTS FSAKTLGWRT FEYHYWSEEA SPISTYVCGL AVLPLHHRHR 420 EERAICKSCG RYFPDIELFN RHLSINPRCR SEQQLIQCKF CGCYFSKQEL FAHFNGFVDS 480 STEPLAPPTP TFEQEKPLGN HENDNALEMD RSKELVDELV ESVEVSKKAA MEQTVEGSVV 540 VPGSTDSASQ QPANLPAAQH RSPAQLAYSS QDRYLLPARA PALSTFCLLY TVAIRPASPP 600 AAHLRTRCRL DSTGSDYHSW VTDVENHLTS KGILPIIQAP NQDLVFVRTP TKHAQAAILM 660 RHHMNKALRL EYMSIKNARE LWVALEERFG NVQNSLLPDL KVQWKNLRFA DFKSRYPKNG 720 GYEGRMDPYN RPNQEGNRKF GVDTRGGNAT RGRGNRGIPS RNGGAMGRGG GTNLLGNASN 780 VHNASEELAE RYRAYRDLRE QEVYLAEEEE VGGDVNLTIE DFKAEDEVLK DAADFD

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence

MEAEADWVST KSLYICSMER YKDESVLTQC YSVQAINLTD LLSFSDTPIT ISFSRSPPTK  60
AMGSPPTKVQ DHILREVDFL QGNDVPYEMG FGVFGSQIVL AGGLQLPQIH PTSKVYVLDT  120
LRDKPKFIKR KANKPKAKAR DHGFPEFQSP KYLPQLMEIE GKLYAVELKP EEDFPSSSSF  180
EVFDPQTGSW AALPDHPPPI IECGGLLSCA VVGTKFLISA GDTPTYCFDV AEPTRPWNEL  240
RLRNDGPKLY DYNDPNSLPF LQVLVLDLEE DNHKILFSSS GNDILVFHMN LSNDLALELI  300
ATIRVDIKFD ESSVSFTHLG GQKVCFVFLD WWIFDKMRGV FFTFEYSFSK SAASPDTQTS  360
SCGDDPYFRV FYPSNSNGTS FSAKTLGWRT FEYHYWSEEA SPISTYVCGL AVLPLHHRHR  420
EERAICKSCG RYFPDIELFN RHLSINPRCR SEQQLIQCKF CGCYFSKQEL FAHFNGFVDS  480
STEPLAPPTP TFEQEKPLGN HENDNALEMD RSKELVDELV ESVEVSKKAA MEQTVEGSVV  540
VPGSTDSASQ QPANLPAAQH RSPAQLAYSS QDRYLLPARA PALSTFCLLY TVAIRPASPP  600
AAHLRTRCRL DSTGSDYHSW VTDVENHLTS KGILPIIQAP NQDLVFVRTP TKHAQAAILM  660
RHHMNKALRL EYMSIKNARE LWVALEERFG NVQNSLLPDL KVQWKNLRFA DFKSRYPKNG  720
GYEGRMDPYN RPNQEGNRKF GVDTRGGNAT RGRGNRGIPS RNGGAMGRGG GTNLLGNASN  780
VHNASEELAE RYRAYRDLRE QEVYLAEEEE VGGDVNLTIE DFKAEDEVLK DAADFD