PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001312.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 372aa MW: 41081.5 Da PI: 10.0464

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001312.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.8e-06	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Rmu_sc0001312.1_g000003.1 80 FVCEICNKGFQRDQNLQLHRRGH 102 89*******************88 PP
2	zf-C2H2	12	0.00062	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Rmu_sc0001312.1_g000003.1 157 WKCDKCSKIYAVQSDWKAHSKTC 179 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MSNSTSLSTD EAASVSSGSR LPDHFACLNP LSVSTIISSP LDHQQPPQKI KKKRSLPGNP 60 DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RSSKDLIKKR 120 AYVCPEPSCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKIYAVQS DWKAHSKTCG 180 TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESARLSASQL AIATTPQISL FPFPNHSHFT 240 NPPPLPFTTL SPWDPPHNPN PNITQNPLHH HVKPEETHHH FPLNPTLFQE TPSPQHKTLI 300 TSPFQHLHVS TQPTSSVATS AHLSATALLQ KAATIGASAA GKQQSQSAGL AEFGTLGGSR 360 PENSPRGRRL TV

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MSNSTSLSTD EAASVSSGSR LPDHFACLNP LSVSTIISSP LDHQQPPQKI KKKRSLPGNP  60
DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RSSKDLIKKR  120
AYVCPEPSCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKIYAVQS DWKAHSKTCG  180
TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESARLSASQL AIATTPQISL FPFPNHSHFT  240
NPPPLPFTTL SPWDPPHNPN PNITQNPLHH HVKPEETHHH FPLNPTLFQE TPSPQHKTLI  300
TSPFQHLHVS TQPTSSVATS AHLSATALLQ KAATIGASAA GKQQSQSAGL AEFGTLGGSR  360
PENSPRGRRL TV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-107	C2H2 family protein