PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001340.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YC
Protein Properties Length: 251aa    MW: 27863.7 Da    PI: 6.6765
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001340.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.27.7e-56811841101
                      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 
                                ql+sfw++q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaa
  Rmu_sc0001340.1_g000002.1  81 QLQSFWANQfqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAA 164
                                89******99999*********************************************************************** PP

                      NF-YC  82 avtrtdifdflvdivprdel 101
                                a+trtdifdflvdivpr++l
  Rmu_sc0001340.1_g000002.1 165 AITRTDIFDFLVDIVPREDL 184
                                *****************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MDQQGHGQPQ SMGMVGSGAQ LAYGTAPYQH TQMVGSPNPA TVGAPVGGIQ SSSQSAGAQL  60
QQHQLAYQHI HQQQQQQLQQ QLQSFWANQF QEIEKVTDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVIF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP  180
REDLKDEVLA SIPRGTVSVG AADALPPYCY MPPQHGSQVG APGMIMGKPM MDPSMYGQQS  240
HPYMAPQMWP H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.32e-83NF-YC family protein