PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001377.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 224aa    MW: 24560.8 Da    PI: 9.4726
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001377.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.16.9e-111969256
                        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                               + kGV+++k + +Wv+eIr+      ++ r +l +f  a+ Aa a++ a  +l+++
  Rmu_sc0001377.1_g000005.1 19 KLKGVCQRK-WDKWVSEIRVlG----MQDRLWLSSFSNAKAAAVACDVAYYCLRKH 69
                               679*****9.**********44....45*************************986 PP
2AP2507.3e-16103152255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                + kGVr++k +g+Wv+eIr+p   gk+ r +lg+f tae Aa a++ a  +l++
  Rmu_sc0001377.1_g000005.1 103 KLKGVRQRK-WGKWVSEIRVP---GKQDRLWLGSFSTAEAAAVARDVAYYCLRK 152
                                679*****9.**********8...556************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MSYSSEDNSS LMTARNGRKL KGVCQRKWDK WVSEIRVLGM QDRLWLSSFS NAKAAAVACD  60
VAYYCLRKHW TLESLNFPTI LPCSVNQAAN SSSPTTAAGN GRKLKGVRQR KWGKWVSEIR  120
VPGKQDRLWL GSFSTAEAAA VARDVAYYCL RKPSTLEGLN FPTVLPCSLI NAYSNCSSSP  180
QNWRQANGSE PRGMQSGGCW DNVGESSSAT TGGVALSISI EDYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.13e-28ERF family protein