PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001386.1_g000016.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 300aa MW: 33544.9 Da PI: 9.1934

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001386.1_g000016.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.5e-12	121	172	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+ +N+ ++ Lr+++P + ++++ + a+i A++++k+L+ Rmu_sc0001386.1_g000016.1 121 QRITHIAVERNRRKLMNDYLAALRSMMPAS---YAQRGDQASIIGGAINFVKELE 172 799*************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MTLEAVVFQP DPFSCGNCLE GSRSWGHGFG FGGDDDQQEK GYVQHDMPNN GNIVGQGLMG 60 YCSPSQVRMQ SVNTGNSNST PETCTGNSNF NNSFSSPMAT TGRRKRRRTR NIKNKEEVET 120 QRITHIAVER NRRKLMNDYL AALRSMMPAS YAQRGDQASI IGGAINFVKE LEQLLQSLEA 180 SRRTKQSHLD LASIFSNFFT FPQYSTCSST NTHGHGHSEY MNNNLVHPHE IMGEKRSGAI 240 ADVEVTMVES HANIKVLLKR HPRQLLKMVV GLHSLRLMIL HLNVSTMDSM ILYSFSVKVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	108	RKRRR
2	104	109	RKRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	1e-56	bHLH family protein