PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001387.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 205aa    MW: 23811.9 Da    PI: 7.983
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001387.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.59.1e-33261252102
                                HHHHHHHHHCTG........GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTT CS
               HSF_DNA-bind   2 Flkklyeilede........elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskek 77 
                                Fl+k+y++le+e          ++++sw+ +gn f+v+ + ef++ +LpkyFkh+nf+SF+RQLn+YgFkk++ ++        
  Rmu_sc0001387.1_g000003.1  26 FLSKTYDLLEEEeeedkdgsGKRSIVSWNGEGNGFIVWSPAEFSELLLPKYFKHNNFSSFIRQLNTYGFKKTSPKR-------- 101
                                9*********66666667768999************************************************9998........ PP

                                SEEEEESXXXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  78 iweFkhksFkkgkkellekikrkks 102
                                 weFkh++F+kg +++l +i+rkk 
  Rmu_sc0001387.1_g000003.1 102 -WEFKHEKFQKGCRHMLLEINRKKC 125
                                .*********************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MCMDQHISEV NHGTGQSSRT RSPAPFLSKT YDLLEEEEEE DKDGSGKRSI VSWNGEGNGF  60
IVWSPAEFSE LLLPKYFKHN NFSSFIRQLN TYGFKKTSPK RWEFKHEKFQ KGCRHMLLEI  120
NRKKCEPSAF PVYLKASEES TSATGLNRSM SNAAEQENQS LLLMEENKNL RKQKMELQMQ  180
LSQFKALETK LLDCVGQYMQ DQHNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-44HSF family protein