PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001394.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family YABBY
Protein Properties Length: 230aa    MW: 25657.1 Da    PI: 8.4034
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001394.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2291.2e-70141882170
                      YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaae.shldeslkeelleelkveeenlks 84 
                                d+   seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++      + + +hl++s+  +   +++  ++++ +
  Rmu_sc0001394.1_g000004.1  14 DHLAPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQfHHLGHSFFSQANSHNNLLDQEIPM 97 
                                57789*****************************************98888776665543678888887755555555555555 PP

                      YABBY  85 nve......keesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                                n +      +++s+ ++ ++        +e+pr+p ++rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWah
  Rmu_sc0001394.1_g000004.1  98 NPTpnflmnNQTSSLNDFAVRP-RGGVVDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAH 180
                                4430000003333333333322.6677899***999************************************************ PP

                      YABBY 163 fPkihfgl 170
                                fP+ihfgl
  Rmu_sc0001394.1_g000004.1 181 FPHIHFGL 188
                                ******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MSSSNSAAST LSLDHLAPSE QLCYVHCNIC DTVLAVSVPC TSLFKTVTVR CGHCTNLLPV  60
NMRGLLLPSP NQFHHLGHSF FSQANSHNNL LDQEIPMNPT PNFLMNNQTS SLNDFAVRPR  120
GGVVDELPRP PVINRPPEKR QRVPSAYNRF IKDEIQRIKS VNPDISHREA FSAAAKNWAH  180
FPHIHFGLMP DQNTVKKTNV RQPEAGEDVL MKDHNGFFAA ANNNVRVSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.19e-81YABBY family protein