PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001424.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 243aa    MW: 27035.1 Da    PI: 8.4592
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001424.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.11.9e-103091257
                               T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               r+R+ +t++ +++ +elF++   +  + e+++++  +l    +++ ++V++WF N+Ra+ekk
  Rmu_sc0001424.1_g000004.1 30 RTRWIPTTDHIRIRKELFYNkgVKSTTIEQIQRICLQLkwygKIEFKNVYFWFVNQRAREKK 91
                               89*****************77799*************************************8 PP
2Wus_type_Homeobox71.31.6e-232993265
          Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               +rtRW Pt++ i+i +el++ +G+++ + e+iqri  +L+ yGkie kNV++WF N++aRe++k+
  Rmu_sc0001424.1_g000004.1 29 SRTRWIPTTDHIRIRKELFYnKGVKSTTIEQIQRICLQLKWYGKIEFKNVYFWFVNQRAREKKKR 93
                               789**************98769****************************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MEPQNRHPTE DGGSNKAAGS SANMLRRESR TRWIPTTDHI RIRKELFYNK GVKSTTIEQI  60
QRICLQLKWY GKIEFKNVYF WFVNQRAREK KKRSTSDVHV PMQRSGLVGD DNVTNQYINF  120
ESSTPASASS AGVMITFNGQ IGNYGGYGSI NMENSARDCS ISAGGGTIST FFDMNVEQTF  180
MEQRGEDHQE IETLSLFPVH GEDIFGNMKT TSDGGGSHGG GSYISLELSL SCEGKAGKSF  240
RSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-24WOX family protein