PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001436.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 253aa    MW: 29329.2 Da    PI: 8.3124
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001436.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.92.9e-22286690
                       FAR1  6 YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                               Y+++v Fs+r+++++k+k++g+ + r fvCskeg r+ +k++ + ++++raetrt+C+a++ +k++k +g+++v ++e+ H+H+l+
  Rmu_sc0001436.1_g000002.1  2 YGRRVEFSIRRHTHYKNKHSGKLILRIFVCSKEGLRTIDKRD-HLTKNPRAETRTSCDAEMIIKLDKsSGRYRVVQFEETHSHDLV 86
                               9**************************************999.99*********************99***************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MYGRRVEFSI RRHTHYKNKH SGKLILRIFV CSKEGLRTID KRDHLTKNPR AETRTSCDAE  60
MIIKLDKSSG RYRVVQFEET HSHDLVIQEC AHMLPSQRNV TSSQGAEMEL VQDSRIPLKL  120
SFELMGREVG GREALGFTKQ YQKNYLQSQR QKKLAYGEVG CLLKYFQNQA LENPSFFYAV  180
QLDSDEQITN ILWADVRMIL DYGLFGDVVS FDTTYRTNEA NRPFGVFVGF NHHRETVIFG  240
AALMYDETSD SFT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-53FAR1 family protein