PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001436.1_g000021.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 190aa    MW: 21525 Da    PI: 10.1835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001436.1_g000021.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.1e-081566654
                               HHHHHHHHHHHHHHHHHHHCTSCCC.....TTS-.STCHHHHHHHHHHHHHH CS
                        HLH  6 nerErrRRdriNsafeeLrellPkas..kapskK.lsKaeiLekAveYIksL 54
                               + +E++RR +++    +L +++P+++  + +sk  ++  + L +A  YIk+L
  Rmu_sc0001436.1_g000021.1 15 KTVEKNRRIHMKGLCLKLASMVPPQYykSSKSKEmMTQQSQLDLAASYIKQL 66
                               679*********************66687777778****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MKKCTSETSS KLDRKTVEKN RRIHMKGLCL KLASMVPPQY YKSSKSKEMM TQQSQLDLAA  60
SYIKQLTERI ENLKERKEKE LKSKLGTSNK SSINNVDRPN KAVVVGSRLP VIKLTESGSS  120
IELMLISGLH KNFMFYEVIS VLEEEGAEVV SANFSTVGDK VFHTIHAQVK ISRVGVETTT  180
VWQRLQDLIY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-26bHLH family protein