PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001453.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20609 Da    PI: 10.2901
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001453.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF528.7e-17443342
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               i n+s r++tf kR+n ++KK  ELS+LC++e++ ii+s+
  Rmu_sc0001453.1_g000004.1  4 ITNNSARKTTFKKRKNNMMKKLRELSTLCGIEACAIIYSP 43
                               89************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MAYITNNSAR KTTFKKRKNN MMKKLRELST LCGIEACAII YSPFDFEPEV WPSSYATENV  60
LKKLKAMPAI EKSRKMLSQE SYLKGMISKA YAKLKRVRRE NHEKELRAVM FQSLTKGIPQ  120
FQNLNLTDMD DLGRLINQKL NEIDNKKKSL SEEVTESQNQ IIQLTPIVNM VNPNPHQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-38M-type_MADS family protein