PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001460.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 402aa MW: 44165.9 Da PI: 6.991

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001460.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.7e-11	143	185	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR r+++++ Lr+l+P+ +K++Ka+i+ Av Y+++Lq Rmu_sc0001460.1_g000011.1 143 SERKRRGRMKEKLYALRSLVPNI-----TKMDKASIVGDAVSYVQDLQ 185 6*******************7.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MDGMGASGNH DLGGHSIIND FELQDFIDDA NFDQFINLIR GENEDPAAAH FDCDLISGSC 60 FVDNQFNPTT PGSGFFGLDH NTTVGSDPAP FLTTLPNFDG EMNDIGEEDN DADSCGTTTT 120 TTTNTTATTT KKPKVDRSRT LVSERKRRGR MKEKLYALRS LVPNITKMDK ASIVGDAVSY 180 VQDLQKHAKK LEAEISGLEA SIEGSGVKQA VSTQNPTKNK LVADKYHLTP TEIIQIDVSQ 240 VEEKSFYVKV GCNKGVGVAT ALYKAIESLT SFNVLSSNLN TVNSGRFEIT LSLNVKESEQ 300 EIINLPNLKL WESTNLVTRF FSLPFGKGLL SLRVRALVVI SSRHRIDTQH CRLSRTITGK 360 FGESMGLIKR IFSLAGLRGH YPYFAGLRGR YPYCASLQLG CR

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MDGMGASGNH DLGGHSIIND FELQDFIDDA NFDQFINLIR GENEDPAAAH FDCDLISGSC  60
FVDNQFNPTT PGSGFFGLDH NTTVGSDPAP FLTTLPNFDG EMNDIGEEDN DADSCGTTTT  120
TTTNTTATTT KKPKVDRSRT LVSERKRRGR MKEKLYALRS LVPNITKMDK ASIVGDAVSY  180
VQDLQKHAKK LEAEISGLEA SIEGSGVKQA VSTQNPTKNK LVADKYHLTP TEIIQIDVSQ  240
VEEKSFYVKV GCNKGVGVAT ALYKAIESLT SFNVLSSNLN TVNSGRFEIT LSLNVKESEQ  300
EIINLPNLKL WESTNLVTRF FSLPFGKGLL SLRVRALVVI SSRHRIDTQH CRLSRTITGK  360
FGESMGLIKR IFSLAGLRGH YPYFAGLRGR YPYCASLQLG CR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28160.1	2e-69	bHLH family protein