PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001473.1_g000032.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 408aa MW: 45724.6 Da PI: 6.4351

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001473.1_g000032.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.8	5.1e-10	141	215	19	91
-HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 19 pkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 p k ae++ +++ +e+++l+++d +s ++W +k++y ++ks++yvl+ + +Fv++ g+++gD++ ++ ++++++ Rmu_sc0001473.1_g000032.1 141 PQKEAEKYlpSLSDKEGIELRIRDaLSTQEWGLKYKYwsNNKSRMYVLE-NAGDFVRQTGVEVGDSIHLY--EDECKN 215 788899999966677899****9999***99888888889999.9**************999..444443 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MENFRPPFTP STTTASSSSP SSTLESSSSQ LYHDPVVCYL PHPHWQQPPC FSYPPPMRPD 60 PIPSSAAWET RMARQRRGNI LRTRKAARAA AASSRLAVGK DPSSAVSEKP NEQYIYSFCT 120 PDNKLLMKCT NVMLICCLPP PQKEAEKYLP SLSDKEGIEL RIRDALSTQE WGLKYKYWSN 180 NKSRMYVLEN AGDFVRQTGV EVGDSIHLYE DECKNLQYVS IHRQAQVRPV HVVKPSSTSY 240 HQQNYTHTNT NTNTAKRDNT NTAIDHTNSK THANTTSIYT PYAYNETGTG EVETSSAVVL 300 LQQQRNEQLV ETNNMVTLFT DPASSYRQSE EASNTNNDVT RQQQTSTQPA MAGIFGSSSS 360 SSSSPSMKMA EDNFGDCYEG LGTLPEVVDR FNHSLFYFDD IITDDKTL

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MENFRPPFTP STTTASSSSP SSTLESSSSQ LYHDPVVCYL PHPHWQQPPC FSYPPPMRPD  60
PIPSSAAWET RMARQRRGNI LRTRKAARAA AASSRLAVGK DPSSAVSEKP NEQYIYSFCT  120
PDNKLLMKCT NVMLICCLPP PQKEAEKYLP SLSDKEGIEL RIRDALSTQE WGLKYKYWSN  180
NKSRMYVLEN AGDFVRQTGV EVGDSIHLYE DECKNLQYVS IHRQAQVRPV HVVKPSSTSY  240
HQQNYTHTNT NTNTAKRDNT NTAIDHTNSK THANTTSIYT PYAYNETGTG EVETSSAVVL  300
LQQQRNEQLV ETNNMVTLFT DPASSYRQSE EASNTNNDVT RQQQTSTQPA MAGIFGSSSS  360
SSSSPSMKMA EDNFGDCYEG LGTLPEVVDR FNHSLFYFDD IITDDKTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28300.1	6e-30	B3 family protein