PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001475.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HSF

Protein Properties

Length: 500aa MW: 56161.8 Da PI: 6.3078

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001475.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.5	2.5e-34	58	149	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 Fl+k+ye+++d ++++++sws++++sf+v+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ Rmu_sc0001475.1_g000001.1 58 FLSKTYEMVDDCSTDSIVSWSASNRSFIVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDD 132 9******************999************************************9998.........*** PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkks 102 F +g+ +l+++i+r+k Rmu_sc0001475.1_g000001.1 133 FVRGEPQLMKNIHRRKP 149 ************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
AGYGLKGQPW IRPIRKVGGP TFEGWRNGGR GWNLDIKFGR GRRLMDEVQG VSGSLPPFLS 60 KTYEMVDDCS TDSIVSWSAS NRSFIVWNPP EFARDLLPKY FKHNNFSSFI RQLNTYGFRK 120 IDPEQWEFAN DDFVRGEPQL MKNIHRRKPV HSHSVPNLQV QGQGQGQGQG SSSLSEAERK 180 SMKDEIERLN HEKERLAVEL QRHEQERQGM ELQMQVLKDR LQHMQRQQQT MASVVARVLQ 240 RPDIALNPLP QFELCGRKRR FSSVDLAYDQ VSIGSGQMGS WENVTGGNME MGKVLQLESF 300 LTFWEDTIHD VAETQLQANT NMELTESTSC AESPAVSCMQ RIVDHQSKST AIDMNTEPAA 360 AVSPVPARSV SPAPAGSVSL ERARSVSPEP TRSVSLECAR SVSPEPARSV SLEPDASKQQ 420 PSKEQTAKIT GAGVNDLFWE QFLTENPGST DSQEVQLERN DSDGRGNEIN PSDHGKLWWN 480 MRNVNNLTEQ MGHLSPVEKT

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

AGYGLKGQPW IRPIRKVGGP TFEGWRNGGR GWNLDIKFGR GRRLMDEVQG VSGSLPPFLS  60
KTYEMVDDCS TDSIVSWSAS NRSFIVWNPP EFARDLLPKY FKHNNFSSFI RQLNTYGFRK  120
IDPEQWEFAN DDFVRGEPQL MKNIHRRKPV HSHSVPNLQV QGQGQGQGQG SSSLSEAERK  180
SMKDEIERLN HEKERLAVEL QRHEQERQGM ELQMQVLKDR LQHMQRQQQT MASVVARVLQ  240
RPDIALNPLP QFELCGRKRR FSSVDLAYDQ VSIGSGQMGS WENVTGGNME MGKVLQLESF  300
LTFWEDTIHD VAETQLQANT NMELTESTSC AESPAVSCMQ RIVDHQSKST AIDMNTEPAA  360
AVSPVPARSV SPAPAGSVSL ERARSVSPEP TRSVSLECAR SVSPEPARSV SLEPDASKQQ  420
PSKEQTAKIT GAGVNDLFWE QFLTENPGST DSQEVQLERN DSDGRGNEIN PSDHGKLWWN  480
MRNVNNLTEQ MGHLSPVEKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	1e-117	HSF family protein