PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001476.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 221aa    MW: 25112.9 Da    PI: 9.3208
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001476.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.41.2e-251462149
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               krien+sn+qvtfskRr+gi+KKA ELSvLC+a  avi+fss +k++ y
  Rmu_sc0001476.1_g000003.1 14 KRIENSSNKQVTFSKRRAGIFKKAGELSVLCGAHMAVIVFSSANKVFCY 62
                               79*******************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MSKKTQGRKK IEIKRIENSS NKQVTFSKRR AGIFKKAGEL SVLCGAHMAV IVFSSANKVF  60
CYGHPDIHAV IESYQNGLNS VVGADDKAQE VLMAEYNKEC EKKRKEEEEL KKKMAETKAK  120
ANEKKMMMEM STSGNQVREG FWWDEPVDLV MLEEREREQY MMALETLRNK VADKAHHKKI  180
LSGTIAETSV PAVHRLYHMM TPNNCFGTGF GDQYGNHGFG I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-26M-type_MADS family protein