PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001476.1_g000019.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 692aa MW: 78628 Da PI: 7.3198

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001476.1_g000019.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	54.3	4.5e-17	59	165	7	128
NAM 7 FhPtdeelvv.eyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 h tdeel + +L+k ++g++ ++ +vi++v+ y+++P++Lp + wy ++++k n + gyW+ + + Rmu_sc0001476.1_g000019.1 59 LHCTDEELCMfTFLHKLINGSPPPT-NVINDVNPYQYKPSNLP-----PGSLWYLIRSNESKD------N---NLGYWRPKEEA 127 6789*975269999999999888.99**********9.....456787776665543......3...46***** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +++ +g ++tL fy+ +a + +kt+Wvm+ey + Rmu_sc0001476.1_g000019.1 128 CKIFT-DSTITGWRTTLEFYERQATHEQKTNWVMQEYWI 165 *.999**************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
LLVSHCSLVS GQPYKYGVVS PESRPFRLAI KEAETPRSSQ RPKVTMHPQA ALLPADIGLH 60 CTDEELCMFT FLHKLINGSP PPTNVINDVN PYQYKPSNLP PGSLWYLIRS NESKDNNLGY 120 WRPKEEACKI FTDSTITGWR TTLEFYERQA THEQKTNWVM QEYWITYEKV SENSKIKEAS 180 LLCRVQSIGA EPKSNCKNLK KKVTSDVANH FTQPVGPLVE KRTGHASSSK PQVIKDNETG 240 TLTVTERLPD HQIEIMPETE IDFPFGDDYI ELLDLDRPAS FSSSSDSSCL TISSDECFDS 300 LALLEELEPK TGQDRANKNA GCKFSISVSQ KPDELVMYAA AASSGSLNKS PSEERGRREL 360 ELGLERVNNY PQPVRRLPRV GRGSLLHRRV AGVAGRDLGI SGVHLCCSLG WSRFGTSLRF 420 FHMVSSVWRS DGWWSAWCKW SEARSWRRYT MDCMALTSNL RWVARRRWQL WWIWVFKVIG 480 MAEARYTESF IDLLVIDLLW FAVWFSRHLR LGEIEDMGLR WWPAGGSSDD KGEEYCGGDF 540 FLLVKVLVLV RLLVSLLWLL VSLLWSIVGP YSFELGLGQI DVSWMWCLSW GRVGVISVLS 600 YGQCANRRSL HVIWFHWNAV WKRALVSLAV VYGVLSSFSG LSVACEVGRN RWLGVGLFWL 660 MDVILDDGPV TSSVFMEESG EFLSTTGHFH IM

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

LLVSHCSLVS GQPYKYGVVS PESRPFRLAI KEAETPRSSQ RPKVTMHPQA ALLPADIGLH  60
CTDEELCMFT FLHKLINGSP PPTNVINDVN PYQYKPSNLP PGSLWYLIRS NESKDNNLGY  120
WRPKEEACKI FTDSTITGWR TTLEFYERQA THEQKTNWVM QEYWITYEKV SENSKIKEAS  180
LLCRVQSIGA EPKSNCKNLK KKVTSDVANH FTQPVGPLVE KRTGHASSSK PQVIKDNETG  240
TLTVTERLPD HQIEIMPETE IDFPFGDDYI ELLDLDRPAS FSSSSDSSCL TISSDECFDS  300
LALLEELEPK TGQDRANKNA GCKFSISVSQ KPDELVMYAA AASSGSLNKS PSEERGRREL  360
ELGLERVNNY PQPVRRLPRV GRGSLLHRRV AGVAGRDLGI SGVHLCCSLG WSRFGTSLRF  420
FHMVSSVWRS DGWWSAWCKW SEARSWRRYT MDCMALTSNL RWVARRRWQL WWIWVFKVIG  480
MAEARYTESF IDLLVIDLLW FAVWFSRHLR LGEIEDMGLR WWPAGGSSDD KGEEYCGGDF  540
FLLVKVLVLV RLLVSLLWLL VSLLWSIVGP YSFELGLGQI DVSWMWCLSW GRVGVISVLS  600
YGQCANRRSL HVIWFHWNAV WKRALVSLAV VYGVLSSFSG LSVACEVGRN RWLGVGLFWL  660
MDVILDDGPV TSSVFMEESG EFLSTTGHFH IM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	5e-14	NAC family protein