PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001484.1_g000021.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 506aa    MW: 56816.6 Da    PI: 5.2287
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001484.1_g000021.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.83.5e-1061245053374
                       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                +lLle A+a+++++ +++q+l++ l+el sp+gd+ q+l++yf++AL +r+++s++++y++l + ++++ + +++ +++  f+e
  Rmu_sc0001484.1_g000021.1 124 DLLLETARAIADKNSARVQQLMWMLNELGSPYGDTDQKLTSYFLQALFSRMTDSGDRCYRTLVSASEKTCSFESTRKMVLKFQE 207
                                68************************************************************8777775554444455556*** PP

                       GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg........skeeleetg 162
                                vsP+ +f+h+++N aI+ea++ge ++Hi+D++ ++++QWp+Ll+aLa+R++++p+lR+T ++ +++g         ++ ++e+g
  Rmu_sc0001484.1_g000021.1 208 VSPWTTFGHVACNGAIMEAFDGEAKLHIVDISNTYCTQWPTLLEALATRTDETPHLRLTSIVVSRAGdgsagvgaTQKVMKEIG 291
                                *************************************************************9988889999***999******* PP

                       GRAS 163 erLakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                                 r++kfA+ +gvpf+fn++ ++ +l++l+l +L+v+ +Eala+n+v +lh+++    ++ ++rd ++++++sl+P++++vve+e
  Rmu_sc0001484.1_g000021.1 292 ARMEKFARLMGVPFKFNAIQHSgDLAELNLADLDVRDDEALAINCVGSLHSIV----AVGNRRDYLISAFRSLKPRIITVVEEE 371
                                *******************6666*****************************8....8888999******************** PP

                       GRAS 246 adhnse....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                                ad++ +    +F+++f e+l+++ + f++l+++++r+s+er ++Er+  gr+iv++vac+  +++er+e++ +W++r++ aGF+
  Rmu_sc0001484.1_g000021.1 372 ADLDVGvdgfDFVQGFQECLRWFRVYFEALDESFARTSNERLMLERA-AGRAIVDLVACAPPDSVERRESATRWSRRMHGAGFS 454
                                99865556669************************************.************************************ PP

                       GRAS 326 pvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                                p ++s+++ +++++llr++k +g+++    ++ + ++l Wkd+p+v++SaWr
  Rmu_sc0001484.1_g000021.1 455 PTSFSDEVCDDVRALLRRYK-EGWSMTqcgDSVAGIFLSWKDQPVVWASAWR 505
                                ********************.7766663435567778**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    
MDTLFRLVTL QQQQQQQQSD QSFNSSTRTT TTTSSSSRSF THHPQHHQHY PQQNDVEECF  60
NFFMDEEDFS SSSSKAHYYP TPPTPTPPPP LTTTTTTPAS ADFSFSPAHD LLNFEFSSPK  120
WAPDLLLETA RAIADKNSAR VQQLMWMLNE LGSPYGDTDQ KLTSYFLQAL FSRMTDSGDR  180
CYRTLVSASE KTCSFESTRK MVLKFQEVSP WTTFGHVACN GAIMEAFDGE AKLHIVDISN  240
TYCTQWPTLL EALATRTDET PHLRLTSIVV SRAGDGSAGV GATQKVMKEI GARMEKFARL  300
MGVPFKFNAI QHSGDLAELN LADLDVRDDE ALAINCVGSL HSIVAVGNRR DYLISAFRSL  360
KPRIITVVEE EADLDVGVDG FDFVQGFQEC LRWFRVYFEA LDESFARTSN ERLMLERAAG  420
RAIVDLVACA PPDSVERRES ATRWSRRMHG AGFSPTSFSD EVCDDVRALL RRYKEGWSMT  480
QCGDSVAGIF LSWKDQPVVW ASAWRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein