PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001493.1_g000055.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 259aa    MW: 28209.9 Da    PI: 4.5616
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001493.1_g000055.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-1746107257
                                T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                 kR+t+t+ ql++L+ l++   ++yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  Rmu_sc0001493.1_g000055.1  46 NKRWTPTPAQLRILQGLYYDkgHKYPTPEQIQEICLHLksygQIEDKNVFFWFQNFKARERQ 107
                                59****************9557**************************************97 PP
2Wus_type_Homeobox95.16.1e-3145108264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RWtPtp Q++iL+ ly+ +G + P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  Rmu_sc0001493.1_g000055.1  45 TNKRWTPTPAQLRILQGLYYdKGHKYPTPEQIQEICLHLKSYGQIEDKNVFFWFQNFKARERQK 108
                                679***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MEPRTLQLME LQTQQQMELQ AQQQGEDGGN NQAAGSSANT PIRPTNKRWT PTPAQLRILQ  60
GLYYDKGHKY PTPEQIQEIC LHLKSYGQIE DKNVFFWFQN FKARERQKLK EFRNVRVGGS  120
LDLKFGSTSS TDDGRSIDLN FGSTGSTGDD GSIDLTLGSC VGYGVDPYSS SPFNTNTRIT  180
SFVTTGGQSA MEQQGGDHQE VETLPLFPEH GEEILGNPKT TSEEGSAFGY YFGGSGGYNS  240
GSPVSLELSL NPSGAADLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-21WOX family protein