PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001526.1_g000046.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 213aa MW: 23284.2 Da PI: 8.52

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001526.1_g000046.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	94.1	2.9e-29	49	140	3	88
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaess 78 +kd hsk++T++g+Rd R+Rl a++a++f+d+qd+LG+d++sk ++W +++ak+ai+el+ + +s+ + + s Rmu_sc0001526.1_g000046.1 49 DQKDCHSKVYTAKGPRDHRIRLTAHTAIQFYDVQDRLGYDRPSKVVDWDIKKAKAAIDELPPWnlnsisvqT-TSS-PTVPISA 130 689***********************************************************9887776531.222.2223333 PP TCP 79 sssasnsssg 88 ++++n s + Rmu_sc0001526.1_g000046.1 131 AQNTQNASLH 140 3333333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MGESHNNLHH RAMTSSSAAS LLGLGIRTAS SSTASEIVEV RGHILRSTDQ KDCHSKVYTA 60 KGPRDHRIRL TAHTAIQFYD VQDRLGYDRP SKVVDWDIKK AKAAIDELPP WNLNSISVQT 120 TSSPTVPISA AQNTQNASLH FSMVEAPSSL SANRRGAMMG SSGVAELVNQ NSSNFLQVRM 180 VWRPKLLIFG EDGVEVVLHV GNDREDGRVG LEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	4e-37	TCP family protein