PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001527.1_g000066.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 240aa MW: 25261.3 Da PI: 10.96

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001527.1_g000066.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.4	4.5e-07	142	168	5	30
HHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 5 hnerErrRRdriNsafeeLrellPk.a 30 h+++Er RR+ri +++ L+el+P+ + Rmu_sc0001527.1_g000066.1 142 HSIAERLRRERIAERIRALQELVPSvN 168 99**********************955 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MANNPSEAQA DDFLEQILGL PNFASADANL TGGDGGLAGA PSSMMLQLSS GDGSGHMGGG 60 GYHGGVFPLG LSLEQGKAGF LKPEEASGSG KRFRDDVVDS RASAVKNVFH GQPISSTVAA 120 APHPPAMRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKV AEADMVQNFR 180 SGFRASPLHG NSASRAHGIS ASRRLRVMAS LRHGYGRGEE MDAADRGVKV AAPFSRSRSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	152	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-29	bHLH family protein