PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001530.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 499aa    MW: 56404.5 Da    PI: 8.1997
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001530.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.4e-174791899
                               --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                         B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                               +pkkf++e+g+    s  + l+ +sg +W+v++  +++ g+++++k+W eF k   L  gDf+vF+++g+sef  +v +f++
  Rmu_sc0001530.1_g000001.1  4 IPKKFVNEYGQC--LSNSVCLKLPSGSEWKVEV--TRSNGKVWFEKCWPEFSKFYSLSIGDFLVFEYEGDSEF--HVFIFDR 79
                               9********855..7889***************..**********************************9999..9999987 PP
2B360.13.9e-19222304286
                                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                fkv ++ ++ ++g l++p +f ++h  k  ++ t++l+ ++gr+W+v+l+y   +++  ++++W  Fv++n+Lk+gD +vF+l+
  Rmu_sc0001530.1_g000001.1 222 FKVVMRRSYIQKGYLSVPSEFSKRHLTK--KPATVILQVLDGRTWSVQLKYHHERSEARFQSCWPVFVRENNLKVGDACVFTLI 303
                                7999999999***************655..5679*****************99999999***********************87 PP

                                S CS
                         B3  86 g 86 
                                +
  Rmu_sc0001530.1_g000001.1 304 N 304
                                5 PP
3B342.61.1e-13404497197
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                ffkv++ s++++++ + +p +fa ++ + k++  +++  + + r W v li  k  +   +++GW  Fv++  L++gD+++F+l
  Rmu_sc0001530.1_g000001.1 404 FFKVTLGSSHMEKSVVHVPASFAWSFIKRKKQ--KVM-LQVTDRLWPVDLIAFKP-SLASFSSGWATFVEEYSLRVGDVCIFEL 483
                                899999*******************9555444..444.44477*******65333.345699*********************9 PP

                                -SS.SEE..EEEEE CS
                         B3  85 dgr.sefelvvkvf 97 
                                ++  ++  l v++f
  Rmu_sc0001530.1_g000001.1 484 MEMnDDIILQVHFF 497
                                97546665666655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    
MQGIPKKFVN EYGQCLSNSV CLKLPSGSEW KVEVTRSNGK VWFEKCWPEF SKFYSLSIGD  60
FLVFEYEGDS EFHVFIFDRS TTEIDYPIKR PKMEEAPEDE FSVEILEDIP PSPKTREKTP  120
LPCRQSYKKM KTSLTGKADQ MFENENTEPF ENPKKNKDSH CSASKIKSVS GFPAKIDGGG  180
SSSTERFLKQ SPEFCGEKHT SNINEKALIQ RSIASKSEKP YFKVVMRRSY IQKGYLSVPS  240
EFSKRHLTKK PATVILQVLD GRTWSVQLKY HHERSEARFQ SCWPVFVREN NLKVGDACVF  300
TLINCIAFVF EVVFYPAAEA ANCPLSPGGR GAIYQVKSKG SPIIEVESEC GVICGIGVSG  360
SLETGKNKMS KTSVQVTERP SSSLTAPLDN HHEAANNFVS ENPFFKVTLG SSHMEKSVVH  420
VPASFAWSFI KRKKQKVMLQ VTDRLWPVDL IAFKPSLASF SSGWATFVEE YSLRVGDVCI  480
FELMEMNDDI ILQVHFFRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-32B3 family protein