PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001530.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 553aa    MW: 61679.6 Da    PI: 8.6984
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001530.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-118713299
                               --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                         B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                                s  + l+ +sg +Wev+l  +++ g+ ++++GW eF +   L+ g f+vF+++g+s f   v +f++
  Rmu_sc0001530.1_g000004.1  8 LSNSVCLKLPSGSKWEVEL--TRCNGKAWFERGWPEFSRFCSLNYGTFLVFRYEGNSHF--EVCIFDT 71
                               677899*************..999999****************************9999..9999986 PP
2B361.71.2e-19220310395
                                EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                         B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                k  +++++   g ++lp +fa++h  +++       +l+ ++gr+W+v ++y  k+s++ + ++GW++Fv++n+Lk+gD++vF 
  Rmu_sc0001530.1_g000004.1 220 KMAMQPSHIHGGTISLPYEFAKRHliKLPAG---IAILRVSDGRTWSVMFKYdHKNSKARLWRSGWSSFVRDNNLKVGDVCVFV 300
                                6678899999999***********7655533...588899************8777888899********************** PP

                                E-SSSEE..EEE CS
                         B3  84 ldgrsefelvvk 95 
                                l++  + +l + 
  Rmu_sc0001530.1_g000004.1 301 LID--CNKLSFE 310
                                986..4444444 PP
3B336.68e-123634261886
                                --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                         B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                                +p +f++++++ k+++++l+++d   rsW v+l    +  +  l +GW  F+k+  L+egD+++F+l++
  Rmu_sc0001530.1_g000004.1 363 VPASFFKSFMKRKKQTVKLQVQD---RSWPVNL--IPSHYSASLCGGWAAFAKERCLEEGDVCIFELTE 426
                                7999**99987776765555555...*******..56665667999********************875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    
MIKYGEDLSN SVCLKLPSGS KWEVELTRCN GKAWFERGWP EFSRFCSLNY GTFLVFRYEG  60
NSHFEVCIFD TSATEIDYPL TIPKIEEADE DDLSIDISKD LTPCPKSTEN SSSLCPRKKM  120
RTSLSGKLDM ISENGNTQPS DMVVLEKPIT NKDSHCSKAE IKRETDFATK TDGGCFSRPE  180
RFPKQTCHEN LGRMKPLTTT EKAIALQRAN AFKSDKPSFK MAMQPSHIHG GTISLPYEFA  240
KRHLIKLPAG IAILRVSDGR TWSVMFKYDH KNSKARLWRS GWSSFVRDNN LKVGDVCVFV  300
LIDCNKLSFE VFFFPTIEAT NCRFSPGYGR GAIVQVKEKK RPIVEAEFNM NCEIGVSTSI  360
ENVPASFFKS FMKRKKQTVK LQVQDRSWPV NLIPSHYSAS LCGGWAAFAK ERCLEEGDVC  420
IFELTEMKEI EPDGGGPGVE RPWSLLHRRW DRGQVSQRLQ LRRFSVEVGV SRCGLANHVV  480
GGCSFTCALA LSRGPASVDH VGGQVEVNGD AGGGVELGRT RVGLWCCRFP AIYNGGRMAK  540
MASAVGGSGR RLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-29B3 family protein