PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001530.1_g000007.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 187aa    MW: 20425.3 Da    PI: 4.2368
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001530.1_g000007.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.6e-1127113899
                                -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                         B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                                + +l+ g l +p++ ++++g      + + ++ ++g  W ++l  +k+ ++++l+kGW +F+k   L+ g  ++F+ +g+   f
  Rmu_sc0001530.1_g000007.1  27 AQALEDGKLEIPRTVVRQCGDR--LAQIILIQVSEGAGWGIEL--TKSNRKIWLQKGWPGFAKHYSLEHGSLLLFSSQGDyLHF 106
                                66788999***********866..555777788**********..*******************************66654444 PP

                                ..EEEEE-S CS
                         B3  91 elvvkvfrk 99 
                                   v++f++
  Rmu_sc0001530.1_g000007.1 107 --GVQIFKR 113
                                ..7777765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MASHGRRNRK GSVFPVTTPS FFVIVLAQAL EDGKLEIPRT VVRQCGDRLA QIILIQVSEG  60
AGWGIELTKS NRKIWLQKGW PGFAKHYSLE HGSLLLFSSQ GDYLHFGVQI FKRNTLEINY  120
PPSEMNYPPN SSSTVEMNPA SGSSHDDSAD AYADNDADDE DDDNDDADDG GANDGDAGSN  180
EDVTMSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-16B3 family protein