PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001530.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 333aa    MW: 37992.1 Da    PI: 8.6355
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001530.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.6e-1419110299
                                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                fk+    ++l+ g + +pk f+ +hg++ +e   + l+ +s  +W++ l  ++++g+++l+kGW eF+k   L+ g  +vF+ +
  Rmu_sc0001530.1_g000008.1  19 FKIV-LDSALRDGKIEIPKAFVMKHGNSLAE--SVLLKVPSRAEWRIGL--TRCDGEVWLEKGWPEFAKFYFLDHGYLLVFSCE 97 
                                4444.3567778889**********988555..69**************..********************************* PP

                                SS.SEE..EEEEE-S CS
                         B3  86 gr.sefelvvkvfrk 99 
                                g+ s+f   v++f++
  Rmu_sc0001530.1_g000008.1  98 GHySSF--QVQIFSR 110
                                999999..9999997 PP
2B3451.9e-14234328699
                                ..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   6 tpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                +++++l++  l l   fa+e+    g+    + + l+++sgr W  ++++  +  +++   +  Wk+Fv++n+Lk+gD +vF+l
  Rmu_sc0001530.1_g000008.1 234 MQKSYLSRY-LKLQGAFAKECvcaRGV----RIVNLQNSSGRIWPATFTVevWSEGKQRQGRVSWKSFVHDNHLKVGDACVFEL 312
                                566666665.89999999999776444....479**********99887777555555556789******************** PP

                                -SS.SEE..EEEEE-S CS
                         B3  85 dgr.sefelvvkvfrk 99 
                                ++  +  +++v++fr+
  Rmu_sc0001530.1_g000008.1 313 KKGcEVPTFKVHIFRA 328
                                *998999999999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MRETDQEPSP FAAKSPSFFK IVLDSALRDG KIEIPKAFVM KHGNSLAESV LLKVPSRAEW  60
RIGLTRCDGE VWLEKGWPEF AKFYFLDHGY LLVFSCEGHY SSFQVQIFSR NALEIDYPMN  120
SSLGEGKELE DDDVSVEILD VVPSKKRGRR ELAGLWPHKT MRTKSGDEAE VNSYHRGKTK  180
HQGVEHQREK RSYGTPSSLK NCQEANEHDV DTRDGAFLRA TSFKYSNPYL VVRMQKSYLS  240
RYLKLQGAFA KECVCARGVR IVNLQNSSGR IWPATFTVEV WSEGKQRQGR VSWKSFVHDN  300
HLKVGDACVF ELKKGCEVPT FKVHIFRAED ADA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-28B3 family protein