PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001634.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 295aa    MW: 33788.9 Da    PI: 9.8568
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001634.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.18.5e-171150342
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               i n+s r+ t+ kR++g++KK +EL +LCd++++ ii+s+
  Rmu_sc0001634.1_g000008.1 11 ITNDSARKATYKKRKKGLMKKVSELTTLCDIDACAIIYSP 50
                               89*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MTRKKVKLTY ITNDSARKAT YKKRKKGLMK KVSELTTLCD IDACAIIYSP YDSQPEIWPS  60
PLGVQRVLAQ FKTMPEMEQS KKMVNQETFL RQRINKAQEQ LKKQKKDNRE KEMARVMFQS  120
LTGKSLRGLT LSDLTDLGWV IDQHMQELHL RMKNIKEEAV KSQNQVQGAQ GVSAAATEHR  180
MAVMKSNGEG SSSNMAMKTG EESSNMQHAA LDRQVFDHMH NMEAMQLQMM QMAAQKQQNP  240
WFMDMMNAPL PTPLPHPDHH QHMGFTGEDM MVPFADHNHN TMWPNPPPAS AFNFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLTYITNDSARKATYKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-59M-type_MADS family protein