PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001656.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 345aa    MW: 37934 Da    PI: 7.4746
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001656.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.4e-1092116126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                +kt+lC+ f++ GtC+y  +C+FaH+
  Rmu_sc0001656.1_g000001.1  92 FKTKLCCKFRA-GTCPYVTNCNFAHS 116
                                69*********.*************8 PP
2zf-CCCH18.63.2e-06165190126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                yk + C+ f+    C+yGd+C+F H+
  Rmu_sc0001656.1_g000001.1 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190
                                78888********************7 PP
3zf-CCCH43.55.1e-14227252126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                +kt++C+ +  tG+C++G++C+FaHg
  Rmu_sc0001656.1_g000001.1 227 WKTRICNKWELTGYCPFGSKCHFAHG 252
                                8************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MSYARETNVV QVITGNGGGA DMWSGDQAVW ATEDEYQVWN NGDALGDSMS NSNYDQRQSQ  60
SRSGSEPPNK KSRNTQDVTS SNRSKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHSIEEL  120
RRPPPNWQEI VAAHEEEKAV SSEPREEFQI PIVTTGYGVE TQRSYKGRHC KKFYTEEGCP  180
YGDNCTFLHD ESSKNRESVA ISLGPGGYGG AAAAAAAGGA NNKPSNWKTR ICNKWELTGY  240
CPFGSKCHFA HGVAELHRYG GGLVDGEIRD SSVPLDNKQG GMPSKTPADN VVVSVPIVPH  300
SDLYHGVPSQ RSSIVSQRPG QRAHQKWKGP DKISRIYGDW IDDIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-126C3H family protein