PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001669.1_g000025.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 259aa    MW: 28316 Da    PI: 4.5563
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001669.1_g000025.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.58.6e-1747107357
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                +R+t+t+ ql++L+el++    +yp+ e+++e+  +l    ++++++V++WF+N +a+e++
  Rmu_sc0001669.1_g000025.1  47 NRWTPTPAQLRILQELYYDknLKYPTPEQIQEICLHLkpygQIEDKNVFFWFKNLKARERQ 107
                                8****************95459*************************************97 PP
2Wus_type_Homeobox89.33.9e-2945108264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RWtPtp Q++iL+ely+ + l+ P+ e+iq+i  +L+ yG+iedkNVf+WF+N kaRerqk
  Rmu_sc0001669.1_g000025.1  45 TSNRWTPTPAQLRILQELYYdKNLKYPTPEQIQEICLHLKPYGQIEDKNVFFWFKNLKARERQK 108
                                689***************98799****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MEPRTLQQME LQTQQQMELQ AQQPTEEGGS NQAAGSSANT PIRPTSNRWT PTPAQLRILQ  60
ELYYDKNLKY PTPEQIQEIC LHLKPYGQIE DKNVFFWFKN LKARERQKLR EFRNVRVDGS  120
LDLNFGSTSS TDDGRSIDLN FGSTGSTGDD GSIDLTFGSR VSYGVDLYSS SPFNANISTT  180
SFGPTGGQSY MEQRGGDHQE VKTLPLFSVH GEDVLGNPKT TSEEGSAFGY YSGGSGGYNS  240
GSPVSLELSL NPSGAADLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-23WOX family protein