PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001677.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family YABBY
Protein Properties Length: 231aa    MW: 25200.9 Da    PI: 9.0319
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001677.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY207.93.5e-6422032170
                      YABBY   2 dvfssseqvCyvqCnfCntilavsvPs......tslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee......... 70 
                                +++ sse+vCyv+Cn CntilavsvP       ++  +vvtvrCGhC++llsvn+  as +  ++s   ++             
  Rmu_sc0001677.1_g000009.1   2 ELTASSERVCYVHCNLCNTILAVSVPAfngpltAATTTVVTVRCGHCANLLSVNIGAASLQYHSTSPSPTTAAAAtphphphtq 85 
                                67889********************95333333678899****************99984444433322222221234778888 PP

                      YABBY  71 .......lleelkveeenlksnvekeesastsvssekl............senedeevprvppvirPPekrqrvPsaynrfike 135
                                       + +++k+++ +++   ++++  s+s ss++             +++++ + prv p irPPekrqrvPsaynrfike
  Rmu_sc0001677.1_g000009.1  86 hyhshpnIFAHQKQHQVSFEDSSSNKDYGSSSSSSTSSkcnkfaaapafdQSSTTVDQPRVSP-IRPPEKRQRVPSAYNRFIKE 168
                                888899955555555555555444444333332222222344588988866667778899888.9******************* PP

                      YABBY 136 eiqrikasnPdishreafsaaaknWahfPkihfgl 170
                                eiqrikasnPdishreafs+aaknWahfP+ihfgl
  Rmu_sc0001677.1_g000009.1 169 EIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 203
                                *********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MELTASSERV CYVHCNLCNT ILAVSVPAFN GPLTAATTTV VTVRCGHCAN LLSVNIGAAS  60
LQYHSTSPSP TTAAAATPHP HPHTQHYHSH PNIFAHQKQH QVSFEDSSSN KDYGSSSSSS  120
TSSKCNKFAA APAFDQSSTT VDQPRVSPIR PPEKRQRVPS AYNRFIKEEI QRIKASNPDI  180
SHREAFSTAA KNWAHFPHIH FGLKLESNKQ AKLDNQTFAG EGTQKSTNGF Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-44YABBY family protein