PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001701.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 345aa MW: 39212.3 Da PI: 5.8088

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001701.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.8	4.4e-53	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 lppGfrFhPtdeelv +yL +kveg ++el evi+ +d+yk++Pw+Lp k + ++ ew+fF++rd+ky++g+r+nratk+gy Rmu_sc0001701.1_g000002.1 6 LPPGFRFHPTDEELVGYYLSRKVEGLEFEL-EVIPVIDLYKFDPWELPeKsFLPRRDMEWFFFCPRDRKYPNGSRTNRATKAGY 88 79**************************.99**********95334455788********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatgkd++v++ +++++g +ktLvfy+grap g +t+W+mheyrl Rmu_sc0001701.1_g000002.1 89 WKATGKDRKVVC-QSSVTGYRKTLVFYRGRAPLGDRTEWIMHEYRL 133 ********.9999*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGGASLPPGF RFHPTDEELV GYYLSRKVEG LEFELEVIPV IDLYKFDPWE LPEKSFLPRR 60 DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSSVTGYRKT LVFYRGRAPL 120 GDRTEWIMHE YRLNDDFAQG SPGHQGVFAL CRVVKKKEHT QKANDSNGEP KAKTTGSTSS 180 NGDLTSTRNS NETFSISAGM SSQVNYQHDE SRHSSHTASP YEVSPMAEFE PAPRGTNPAD 240 FWISPDLILD SSKDYPQLQG AVPNYFPQYE FPSTMSPWQS YEHTEISPSS SYSNFGDFQM 300 ADDMNQMASM SPFSGHTDYM GYCGNEGLQF EGFDQTSTVR YPNHF

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGGASLPPGF RFHPTDEELV GYYLSRKVEG LEFELEVIPV IDLYKFDPWE LPEKSFLPRR  60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSSVTGYRKT LVFYRGRAPL  120
GDRTEWIMHE YRLNDDFAQG SPGHQGVFAL CRVVKKKEHT QKANDSNGEP KAKTTGSTSS  180
NGDLTSTRNS NETFSISAGM SSQVNYQHDE SRHSSHTASP YEVSPMAEFE PAPRGTNPAD  240
FWISPDLILD SSKDYPQLQG AVPNYFPQYE FPSTMSPWQS YEHTEISPSS SYSNFGDFQM  300
ADDMNQMASM SPFSGHTDYM GYCGNEGLQF EGFDQTSTVR YPNHF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	1e-108	NAC family protein