PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001701.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 315aa    MW: 35305 Da    PI: 5.8676
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001701.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.81.4e-4261381128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeek..ewyfFskrdkkyatgkrknra 77 
                                lppGfrFhPtdeelv +yL +kveg ++el evi+ +d+yk++Pw+Lp +     ++++++      +  +++ +   +r+nra
  Rmu_sc0001701.1_g000003.1   6 LPPGFRFHPTDEELVGYYLSRKVEGLEFEL-EVIPVIDLYKFDPWELPgNcyiiLFNSRNRfsPGEIWNGSSSVQGIASRTNRA 88 
                                79****************************.99***************3333331111111111134444445555667***** PP

                        NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                tk+gyWkatgkd++v++ +++++g +ktLvfy+grap g +t+W+mheyrl
  Rmu_sc0001701.1_g000003.1  89 TKAGYWKATGKDRKVVC-QSSVTGYRKTLVFYRGRAPLGDRTEWIMHEYRL 138
                                *****************.9999***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MGGASLPPGF RFHPTDEELV GYYLSRKVEG LEFELEVIPV IDLYKFDPWE LPGNCYIILF  60
NSRNRFSPGE IWNGSSSVQG IASRTNRATK AGYWKATGKD RKVVCQSSVT GYRKTLVFYR  120
GRAPLGDRTE WIMHEYRLND DFAQGSPGHQ GVFALCRVVK KKEHTQKAND SNGEPKAKTT  180
GSTSSNGDLT STRNSNETFS ISAGMSSQVN YQHDESRHSS HTASPYEVSP MAEFEPAPRG  240
TNPADFWISP DLILDSSKDY PQLQGAVPNY FPQYEFPSTM SPWQSYEHTE ISPSSSYSNF  300
GDFQMADDMN QMASM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.12e-87NAC family protein