PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001754.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family E2F/DP
Protein Properties Length: 936aa    MW: 105150 Da    PI: 9.6677
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001754.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP54.81.5e-17518575971
                    E2F_TDP   9 ltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                                l  +f++l+ ++  + v l+++a +L    v  +rRRiYDi+NVLe+++++++k+kn+++wkg
  Rmu_sc0001754.1_g000006.1 518 LPGRFIALYDREGVTSVGLDDAAARL---GV--ERRRIYDIVNVLESVGVLSRKAKNQYTWKG 575
                                56689*****9999************...**..****************************98 PP
2E2F_TDP70.71.7e-22648741171
                    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse..................dvknkrRRiYDilNVLealnliek..... 61 
                                r+eksL lltq+f+kl+ +s+ + ++l+e+a+ L+ +                  d+  k+RRiYDi+NVL+++nliek     
  Rmu_sc0001754.1_g000006.1 648 RREKSLALLTQNFVKLFVCSTVESISLDEAARLLLGDahnasvmrraetlafsllDEAAKVRRIYDIANVLSSMNLIEKthtad 731
                                689****************************************************8889************************* PP

                    E2F_TDP  62 kekneirwkg 71 
                                ++k++++w g
  Rmu_sc0001754.1_g000006.1 732 TRKPAYKWLG 741
                                9*******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    
MFTLLRKTPS LKNPEPSFSI PLHHNLTTSP PPQPPQDAAF ATLILKSDPQ SLPRILHDPN  60
IHWTPDSVNK TLKRLWNHGP KALVFFKTLD RHPTYTPSSS SYDHAVDIAG RLRDYKSLWA  120
FVARMRARRV GPGPRTFAII TERYVAAGKP DRAVKVFLSM HEHGCPQDLN SFNTVLDVLC  180
KAKRVEKAYN LFKVFRGRFR ADCVSYNVIV NGWCLIKRTP KALEVLREMV ERGIEPSLFT  240
YNVMLKGYLR AGQVKEAWEF FLEMKKRKCE IDVVTYTTLV HGFGVVGEVK KARRIFDGMV  300
EEGVLPSVAT YNALIQVLCK KDSVENAVVV FEEMVSKGYV PNVTTYNVLI RGLCHAGDME  360
RGMELMGRMK GDECEPNVQT YNVVIRYFCD DGEIDKALDV FEKMGRGECL PNLDTYNVLI  420
SAMFVRKKPE DLLVAGKLLI EMVDRGFLPR KYTFNRVLDG LLLTGNQGFA KEILRLQSKC  480
GRLPRQLVSN WNVSTTYRAV LREVNLGDLS THRSDAYLPG RFIALYDREG VTSVGLDDAA  540
ARLGVERRRI YDIVNVLESV GVLSRKAKNQ YTWKGFGAIP IALQDLKEEG LKENFNTFHG  600
NLQGSDDPKC SQGSDDEEGD ESGPATVSQN ENPGVHPKSS GNSKNDNRRE KSLALLTQNF  660
VKLFVCSTVE SISLDEAARL LLGDAHNASV MRRAETLAFS LLDEAAKVRR IYDIANVLSS  720
MNLIEKTHTA DTRKPAYKWL GLKGKDAVSS ASDESRKRAF GTDITNVSCK RGKVESSTAG  780
KLEAQKQKLH ETTVRQRERR ESTVHKVDRN NLEDSKENTK SYQFGPFAPV TIARAGNFNM  840
KKVDWDNLSS TYRPQYQNQA LQSTMVQGFT RQPQPIYPAT PSTPASTPPH TPANIPPITF  900
GSISTPTTAW QGWILMAERY LRTQRIPPSE KVAIAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-100E2F/DP family protein