PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001761.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CO-like

Protein Properties

Length: 459aa MW: 51481.6 Da PI: 5.6434

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001761.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25	3.8e-08	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ + k++++fC ++ +lC+ C + H+ H++v Rmu_sc0001761.1_g000007.1 16 VRACDSCLVKRARWFCGADDAFLCQRCDASVHSAnllasrHERV 59 678*****************************668888888876 PP
2	CCT	68	2.5e-23	388	431	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Rmu_sc0001761.1_g000007.1 388 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 431 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MITEKKAANA MGGNSVRACD SCLVKRARWF CGADDAFLCQ RCDASVHSAN LLASRHERVR 60 LKSASHKLGD HLAIEPPVPT WQQGVKRKAR TPRGHGNHNK SGKDEAGKVL GQSMPFVPEI 120 GSEEVDYCCL EDDHESEDLE QLLYRVPIFD PFEAEACNNM TNIDHHEVKM GNGHEDYGAR 180 TSSPSDELDN LQGLILPSDM ELAEFAADVE NMLGKGFDED CSDIKGLGLL DGTKEEEDHG 240 MDVCIGIEER KLVKIEEEED QGMECEFNPS VLDWNFDYDD ESTAVLLGGS TNTDQKEEEK 300 VAVLMEAEKK RKKICLRLNH EAVISAWASQ GSPWTTGVKP ELNPDDGWPD CMGIWGTDQI 360 MNLQGYGDGS AAGCRMGRRG DNEQRPGREA RVSRYREKRR TRLFSKKIRY EVRKLNAEKR 420 PRMKGRFVKR TSFQMGMGSS STTNTSAAPH YQQHQHLKK

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MITEKKAANA MGGNSVRACD SCLVKRARWF CGADDAFLCQ RCDASVHSAN LLASRHERVR  60
LKSASHKLGD HLAIEPPVPT WQQGVKRKAR TPRGHGNHNK SGKDEAGKVL GQSMPFVPEI  120
GSEEVDYCCL EDDHESEDLE QLLYRVPIFD PFEAEACNNM TNIDHHEVKM GNGHEDYGAR  180
TSSPSDELDN LQGLILPSDM ELAEFAADVE NMLGKGFDED CSDIKGLGLL DGTKEEEDHG  240
MDVCIGIEER KLVKIEEEED QGMECEFNPS VLDWNFDYDD ESTAVLLGGS TNTDQKEEEK  300
VAVLMEAEKK RKKICLRLNH EAVISAWASQ GSPWTTGVKP ELNPDDGWPD CMGIWGTDQI  360
MNLQGYGDGS AAGCRMGRRG DNEQRPGREA RVSRYREKRR TRLFSKKIRY EVRKLNAEKR  420
PRMKGRFVKR TSFQMGMGSS STTNTSAAPH YQQHQHLKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	309	313	KKRKK
2	399	415	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-86	CO-like family protein