PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001773.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 24954.4 Da    PI: 10.0414
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001773.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.47.5e-184441251
                               HHHHHH.HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF 12 tfskRr.ngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               tf +Rr +++ KKA+ELS+LC+aevavi f s+gkl+eyss
  Rmu_sc0001773.1_g000020.1  4 TFGRRRhATLVKKAQELSILCAAEVAVIAFTSDGKLHEYSS 44
                               666665269******************************96 PP
2K-box35.63.9e-1381170897
                      K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                                ++e+++ +s+++ l  Lk +   L+  + +++G+ L+ Ls +eL  Leqq + +l ++ +kK+ell++ +++++ +e+++ +e+
  Rmu_sc0001773.1_g000020.1  81 AAEQKDPKSSDKVLHALKGQHAALKLDKQRRMGKALDGLSREELYALEQQQKWALVSVMKKKEELLVRLLHRSKAREQQAIQEK 164
                                467778888999999**********999******************************************************** PP

                      K-box  92 kaLrkk 97 
                                ++Lr+ 
  Rmu_sc0001773.1_g000020.1 165 ENLRRG 170
                                ***986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MTETFGRRRH ATLVKKAQEL SILCAAEVAV IAFTSDGKLH EYSSTSSVEH TLSRYKNNKG  60
GQVLPTKVES DPPKERRRET AAEQKDPKSS DKVLHALKGQ HAALKLDKQR RMGKALDGLS  120
REELYALEQQ QKWALVSVMK KKEELLVRLL HRSKAREQQA IQEKENLRRG YEVRTTEKPY  180
LQLFPENSTS FCTSSKAVSL SNCPTENMDI SLHLGLSYNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-27MIKC_MADS family protein