PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001809.1_g000062.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 253aa MW: 27592.9 Da PI: 8.5426

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001809.1_g000062.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.6	5e-09	1	17	10	26
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 +r+G CkyG++C+F+H+ Rmu_sc0001809.1_g000062.1 1 MRNGSCKYGSNCRFNHP 17 89**************9 PP
2	zf-CCCH	29.4	1.4e-09	125	151	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC+ff+rtG Ck+ ++Ck++H++ Rmu_sc0001809.1_g000062.1 125 PGQRLCSFFLRTGDCKFKSNCKYHHPK 151 5899*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MRNGSCKYGS NCRFNHPDPT AAGGSDPPSG FDNGGPASLQ GGSQSSSWSA PRSLNETPLY 60 MPMMMPPSQG VPSQNTEWNG YQAPVYLERS MPARPPYVIN NSGTKTNVYK QYPPSNQVDE 120 FPERPGQRLC SFFLRTGDCK FKSNCKYHHP KSQTAVSPSF APSDKGLPLR PLNFLSKLGR 180 AGRYVRMEEP IGEYCCPVQI IDSDGDFKNA GLDRFIEQAK LGECGASYVI TSIIGAQSSG 240 KSTVSAPDSL RWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	9e-45	C3H family protein