PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001813.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 502aa    MW: 56405.7 Da    PI: 6.7232
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001813.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3642.1e-1111374951374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                l++lL+ecA a+s ++  +a+++L +l ++asp+g +  +R++ayf++A+++r+++s+ ++++ l   ++          a+++
  Rmu_sc0001813.1_g000002.1 137 LITLLFECAVAISVENPGEAHRMLLELTQMASPYGpSCAERVVAYFAKAMSSRVLNSWLGICSPLVNYKS-------IHGAFQV 213
                                5789*******************************9999***********************87765554.......467999* PP

                       GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                f+ +sP++kf+h+t NqaIlea+++ +rvHiiD+di+qGlQWpaL++ +a+R egpp++R+Tg+g+    s+e l etg++L++
  Rmu_sc0001813.1_g000002.1 214 FNTISPFIKFAHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHIIATRMEGPPHVRMTGFGA----SSEVLLETGKQLSN 293
                                ******************************************************************....9************* PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                fA++lg++fef++++ k  + l++++ +v++gE++aV++    h+l+d +++       ++kl+ +lsP++v++veqe++hn++
  Rmu_sc0001813.1_g000002.1 294 FARRLGLSFEFHPITRKFGDHLDTSMVQVRRGETVAVHWLQ--HSLYDATGPDWR----TMKLIEELSPRIVTLVEQEMSHNGG 371
                                *************9999999********************9..999988888877....************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaa 334
                                sFl+rf+ +l+yys++fdslea lp+++ +r+ vE+ l+ rei n++a  g +r  +  ++++Wr+ l++   F +v +s + +
  Rmu_sc0001813.1_g000002.1 372 SFLDRFVGSLHYYSTMFDSLEAYLPSDNPNRHLVEHSLMYREINNILAVGGPARSGED-KFRHWRSELGAsNSFMQVGMSGNSM 454
                                *****************************************************77665.5********98578*********** PP

                       GRAS 335 kqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +qa+l+l++++ s+gy++ + +g++ lgWkd +L+++SaW+
  Rmu_sc0001813.1_g000002.1 455 AQAQLILNMFPpSNGYNLVQGDGTIRLGWKDTSLYVASAWT 495
                                ****************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    
MKAEFEMVHG TVNMIQPHET NWINNSTSVN PFPKPASDLS QWVEHITKQL IDDLPETATT  60
TADTLHTAAT SGDQYFIPPS HSGEFSPRKA PRKNYGDDTS ADRVDYDLQW GNELQLHAEN  120
NRRARGLSKL DQHGLTLITL LFECAVAISV ENPGEAHRML LELTQMASPY GPSCAERVVA  180
YFAKAMSSRV LNSWLGICSP LVNYKSIHGA FQVFNTISPF IKFAHFTSNQ AILEAFHRRD  240
RVHIIDLDIM QGLQWPALFH IIATRMEGPP HVRMTGFGAS SEVLLETGKQ LSNFARRLGL  300
SFEFHPITRK FGDHLDTSMV QVRRGETVAV HWLQHSLYDA TGPDWRTMKL IEELSPRIVT  360
LVEQEMSHNG GSFLDRFVGS LHYYSTMFDS LEAYLPSDNP NRHLVEHSLM YREINNILAV  420
GGPARSGEDK FRHWRSELGA SNSFMQVGMS GNSMAQAQLI LNMFPPSNGY NLVQGDGTIR  480
LGWKDTSLYV ASAWTCSHAS SR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-139GRAS family protein