PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001836.1_g000048.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 208aa    MW: 22680 Da    PI: 7.5492
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001836.1_g000048.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix27.77e-09122185160
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkr 60 
                                +Wt +e  +Li + ++ +++l r++lk++ W++v+  +          +++ qC +k+++l+++
  Rmu_sc0001836.1_g000048.1 122 CWTYNEAETLISIFKDQWSSLDRTNLKATNWDDVATTLaaqfPLVSPLKTAMQCHNKINKLRRE 185
                                7*************************************54332223357899********9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MESGHQLARL LTLVTSVVVF CSNLAGRARL GAVKVTVANR DFSRFQAIPA VSGHQTGVEG  60
GAAKIWWPLV VVAGGARGPR AATVDGVCSL SSPTTTITTL IPPLTYALAS LLIPHPNAPP  120
PCWTYNEAET LISIFKDQWS SLDRTNLKAT NWDDVATTLA AQFPLVSPLK TAMQCHNKIN  180
KLRREVEMGL KVEQEHPWDE IGEEDYRH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-16Trihelix family protein